Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes

Persistent Link:
http://hdl.handle.net/10150/610150
Title:
Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes
Author:
St John, John; Braun, Edward; Isberg, Sally; Miles, Lee; Chong, Amanda; Gongora, Jaime; Dalzell, Pauline; Moran, Christopher; Bed'Hom, Bertrand; Abzhanov, Arkhat; Burgess, Shane; Cooksey, Amanda; Castoe, Todd; Crawford, Nicholas; Densmore, Llewellyn; Drew, Jennifer; Edwards, Scott; Faircloth, Brant; Fujita, Matthew; Greenwold, Matthew; Hoffmann, Federico; Howard, Jonathan; Iguchi, Taisen; Janes, Daniel; Khan, Shahid; Kohno, Satomi; de Koning, AP Jason; Lance, Stacey; McCarthy, Fiona; McCormack, John
Affiliation:
Department of Biomolecular Engineering, University of California, Santa Cruz, CA 95064, USA; Department of Biology, University of Florida, Gainesville, FL 32611 USA; Porosus Pty Ltd, PO Box 86, Palmerston, NT 0831, Australia; South Eastern Area Laboratory Services, Randwick, NSW 2031, Australia; Faculty of Veterinary Science, University of Sydney, NSW 2006, Australia; INRA, AgroParisTech, UMR1313 Animal Genetics and Integrative Biology, Jouy-en-Josas, F78352, France; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA; Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, USA; Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO 80045, USA; Department of Biology, Boston University, 5 Cummington Street, Boston, MA 02215, USA; Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USA; Department of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611 USA; Department of Ecology and Evolutionary Biology, University of California, 621 Charles E. Young Drive South, Los Angeles, CA 90095, USA; Department of Biological Sciences, University of South Carolina, Columbia, SC 29205, USA; Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, MS 39762, USA; Department of Molecular, Cell & Developmental Biology, University of California, Santa Cruz, CA 95064, USA; Okazaki Institute for Integrative Bioscience, National Institute for Basic Biology, National Institutes of Natural Sciences, 5-1 Higashiyama, Myodaiji, Okazaki 444-8787, Japan; Department of Organismic and Evolutionary Biology, Harvard University, 16 Divinity Ave, Cambridge, MA 02138, USA; Cuurent address: National Institute of General Medical Sciences, National Institutes of Health, Bethesda, MD 2089, USA; Hollings Marine Laboratory, Marine Biomedicine and Environmental Sciences, Department of Obstetrics and Gynecology, Medical University of South Carolina, Charleston, SC 29412, USA; Savannah River Ecology Laboratory, University of Georgia, PO Drawer E, Aiken, SC 29802, USA; College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA; Moore Laboratory of Zoology, Occidental College, 1600 Campus Rd, Los Angeles, CA 90041, USA; Department of Chemistry, McNeese State University, Lake Charles, LA 70609, USA; Department of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS 39762, USA; Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95064, USA; Department of Animal & Food Sciences University of Delaware, Newark DE, 19717, USA; Department of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611 USA; Howard Hughes Medical Institute, Duke University Medical Center, Department of Neurobiology, Box 3209, Durham, NC 27710, USA; Department of Environmental Health Science and Georgia Genomics Facility, Environmental Health Science Building, University of Georgia, Athens, GA 30602, USA
Issue Date:
2012
Publisher:
BioMed Central
Citation:
St John et al. Genome Biology 2012, 13:415 http://genomebiology.com/2012/13/1/415
Journal:
Genome Biology
Rights:
© 2012 BioMed Central Ltd
Collection Information:
This item is part of the UA Faculty Publications collection. For more information this item or other items in the UA Campus Repository, contact the University of Arizona Libraries at repository@u.library.arizona.edu.
Abstract:
The International Crocodilian Genomes Working Group (ICGWG) will sequence and assemble the American alligator (Alligator mississippiensis), saltwater crocodile (Crocodylus porosus) and Indian gharial (Gavialis gangeticus) genomes. The status of these projects and our planned analyses are described.
DOI:
10.1186/gb-2012-13-1-415
Keywords:
Genomics; evolution; Crocodylia; Archosauria; amniote
Version:
Final published version
Additional Links:
http://genomebiology.com/2012/13/1/415

Full metadata record

DC FieldValue Language
dc.contributor.authorSt John, Johnen
dc.contributor.authorBraun, Edwarden
dc.contributor.authorIsberg, Sallyen
dc.contributor.authorMiles, Leeen
dc.contributor.authorChong, Amandaen
dc.contributor.authorGongora, Jaimeen
dc.contributor.authorDalzell, Paulineen
dc.contributor.authorMoran, Christopheren
dc.contributor.authorBed'Hom, Bertranden
dc.contributor.authorAbzhanov, Arkhaten
dc.contributor.authorBurgess, Shaneen
dc.contributor.authorCooksey, Amandaen
dc.contributor.authorCastoe, Todden
dc.contributor.authorCrawford, Nicholasen
dc.contributor.authorDensmore, Llewellynen
dc.contributor.authorDrew, Jenniferen
dc.contributor.authorEdwards, Scotten
dc.contributor.authorFaircloth, Branten
dc.contributor.authorFujita, Matthewen
dc.contributor.authorGreenwold, Matthewen
dc.contributor.authorHoffmann, Federicoen
dc.contributor.authorHoward, Jonathanen
dc.contributor.authorIguchi, Taisenen
dc.contributor.authorJanes, Danielen
dc.contributor.authorKhan, Shahiden
dc.contributor.authorKohno, Satomien
dc.contributor.authorde Koning, AP Jasonen
dc.contributor.authorLance, Staceyen
dc.contributor.authorMcCarthy, Fionaen
dc.contributor.authorMcCormack, Johnen
dc.date.accessioned2016-05-20T08:59:41Z-
dc.date.available2016-05-20T08:59:41Z-
dc.date.issued2012en
dc.identifier.citationSt John et al. Genome Biology 2012, 13:415 http://genomebiology.com/2012/13/1/415en
dc.identifier.doi10.1186/gb-2012-13-1-415en
dc.identifier.urihttp://hdl.handle.net/10150/610150-
dc.description.abstractThe International Crocodilian Genomes Working Group (ICGWG) will sequence and assemble the American alligator (Alligator mississippiensis), saltwater crocodile (Crocodylus porosus) and Indian gharial (Gavialis gangeticus) genomes. The status of these projects and our planned analyses are described.en
dc.language.isoenen
dc.publisherBioMed Centralen
dc.relation.urlhttp://genomebiology.com/2012/13/1/415en
dc.rights© 2012 BioMed Central Ltden
dc.subjectGenomicsen
dc.subjectevolutionen
dc.subjectCrocodyliaen
dc.subjectArchosauriaen
dc.subjectamnioteen
dc.titleSequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotesen
dc.typeArticleen
dc.contributor.departmentDepartment of Biomolecular Engineering, University of California, Santa Cruz, CA 95064, USAen
dc.contributor.departmentDepartment of Biology, University of Florida, Gainesville, FL 32611 USAen
dc.contributor.departmentPorosus Pty Ltd, PO Box 86, Palmerston, NT 0831, Australiaen
dc.contributor.departmentSouth Eastern Area Laboratory Services, Randwick, NSW 2031, Australiaen
dc.contributor.departmentFaculty of Veterinary Science, University of Sydney, NSW 2006, Australiaen
dc.contributor.departmentINRA, AgroParisTech, UMR1313 Animal Genetics and Integrative Biology, Jouy-en-Josas, F78352, Franceen
dc.contributor.departmentDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USAen
dc.contributor.departmentInstitute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, USAen
dc.contributor.departmentDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO 80045, USAen
dc.contributor.departmentDepartment of Biology, Boston University, 5 Cummington Street, Boston, MA 02215, USAen
dc.contributor.departmentDepartment of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USAen
dc.contributor.departmentDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611 USAen
dc.contributor.departmentDepartment of Ecology and Evolutionary Biology, University of California, 621 Charles E. Young Drive South, Los Angeles, CA 90095, USAen
dc.contributor.departmentDepartment of Biological Sciences, University of South Carolina, Columbia, SC 29205, USAen
dc.contributor.departmentDepartment of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, MS 39762, USAen
dc.contributor.departmentDepartment of Molecular, Cell & Developmental Biology, University of California, Santa Cruz, CA 95064, USAen
dc.contributor.departmentOkazaki Institute for Integrative Bioscience, National Institute for Basic Biology, National Institutes of Natural Sciences, 5-1 Higashiyama, Myodaiji, Okazaki 444-8787, Japanen
dc.contributor.departmentDepartment of Organismic and Evolutionary Biology, Harvard University, 16 Divinity Ave, Cambridge, MA 02138, USAen
dc.contributor.departmentCuurent address: National Institute of General Medical Sciences, National Institutes of Health, Bethesda, MD 2089, USAen
dc.contributor.departmentHollings Marine Laboratory, Marine Biomedicine and Environmental Sciences, Department of Obstetrics and Gynecology, Medical University of South Carolina, Charleston, SC 29412, USAen
dc.contributor.departmentSavannah River Ecology Laboratory, University of Georgia, PO Drawer E, Aiken, SC 29802, USAen
dc.contributor.departmentCollege of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USAen
dc.contributor.departmentMoore Laboratory of Zoology, Occidental College, 1600 Campus Rd, Los Angeles, CA 90041, USAen
dc.contributor.departmentDepartment of Chemistry, McNeese State University, Lake Charles, LA 70609, USAen
dc.contributor.departmentDepartment of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS 39762, USAen
dc.contributor.departmentCenter for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95064, USAen
dc.contributor.departmentDepartment of Animal & Food Sciences University of Delaware, Newark DE, 19717, USAen
dc.contributor.departmentDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611 USAen
dc.contributor.departmentHoward Hughes Medical Institute, Duke University Medical Center, Department of Neurobiology, Box 3209, Durham, NC 27710, USAen
dc.contributor.departmentDepartment of Environmental Health Science and Georgia Genomics Facility, Environmental Health Science Building, University of Georgia, Athens, GA 30602, USAen
dc.identifier.journalGenome Biologyen
dc.description.collectioninformationThis item is part of the UA Faculty Publications collection. For more information this item or other items in the UA Campus Repository, contact the University of Arizona Libraries at repository@u.library.arizona.edu.en
dc.eprint.versionFinal published versionen
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